PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A02G1568
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 542aa    MW: 56102.9 Da    PI: 8.7936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A02G1568genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056082123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Gh_A02G1568 60 FVCEICNKGFQRDQNLQLHRRGH 82
                 89*******************88 PP

2zf-C2H211.10.0012136158123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Gh_A02G1568 136 WKCDKCSKKYAVQSDWKAHSKIC 158
                  58*****************9876 PP

3zf-C2H211.50.00095166184523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Gh_A02G1568 166 DCGTVFSRRDSFITHRAFC 184
                  9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.46E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.46E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MPVDDYSSTV SGDASVSSTG NQNLPPKSTV KKKRNLPGMP DPDAEVIALS PTTLLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVKKRV YVCPEPTCVH HDPSRALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYKCDCGTV FSRRDSFITH  180
RAFCDALAVE SAKTQTNPSS ESDPKVQAAD SSPRRSPPAA SPPVSAPSAI TSSDIRIQSS  240
DPSTVVEEAP APAPAPSPPP AGLNGSSSSS VSLVSSGCNS SSSSVFSNLF TSTTVSASIH  300
PPQPLAPAPP LVGLNGSCSG SVSLVSSGAS SSSSSGVFAS LFASSTVSAS IQPPQTPALT  360
NLIRADLAPS TSIEPISLCL STSHGSSIFG TTGQERRQHA PPLQPAMSAT ALLQKAAQMG  420
AAASNASLLR GLGIVSSSAP QENLQWGQAQ VDPDNASIAA GLGLGLPCDG SSGLKELMMG  480
TPVFGPKQTT LDFLGLGVAA GGNPNASLSA LITSIGSGFD ATTAAASFRG GDYTSKDIGR  540
SS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.201510.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469452.10.0PREDICTED: protein indeterminate-domain 2-like isoform X2
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0PEB20.0A0A0B0PEB2_G
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-109C2H2-like zinc finger protein